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R2601_01503 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01503" - ABC transporter, substrate binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01503ABC transporter, substrate binding protein (Oligopeptide) (547 aa)    
Predicted Functional Partners:
R2601_01498
ABC transporter, membrane spanning protein (Oligopeptide) (303 aa)
 
          0.932
R2601_01493
ABC transporter, membrane spanning protein (Oligopeptide) (295 aa)
 
          0.924
R2601_23700
Peptide/nickel/opine uptake family ABC transporter, permease protein (345 aa)
 
          0.823
R2601_18138
ABC transporter permease protein (325 aa)
 
          0.812
R2601_18143
ABC transporter permease protein (266 aa)
 
          0.802
R2601_15697
Oligopeptide ABC transporter permease protein (299 aa)
 
          0.799
R2601_23695
Peptide/nickel/opine uptake family ABC transporter, permease protein (334 aa)
 
          0.797
R2601_15702
Probable inner membrane component of binding-protein-dependent transport system (316 aa)
 
          0.768
R2601_01518
Transcriptional regulator, MarR family protein (168 aa)
 
          0.750
R2601_23163
Binding-protein-dependent transport systems inner membrane component (308 aa)
 
          0.731
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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