STRINGSTRING
R2601_01513 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01513" - Agropine synthesis reductase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01513Agropine synthesis reductase (233 aa)    
Predicted Functional Partners:
R2601_01518
Transcriptional regulator, MarR family protein (168 aa)
              0.862
R2601_01508
Oxidoreductase (423 aa)
              0.689
R2601_06098
3-ketoacyl-(Acyl-carrier-protein) reductase (258 aa)
   
          0.656
R2601_03553
Short-chain dehydrogenase/reductase SDR (255 aa)
   
          0.641
R2601_03498
Putative oxidoreductase (257 aa)
   
          0.619
R2601_01553
Probable dehydrogenase (251 aa)
   
          0.619
R2601_06178
Uncharacterized protein (258 aa)
   
          0.615
R2601_01050
3-oxoacyl-(Acyl-carrier-protein) reductase (271 aa)
   
          0.611
R2601_03493
Short-chain alcohol dehydrogenase (242 aa)
   
          0.597
R2601_00645
3-ketoacyl-(Acyl-carrier-protein) reductase (267 aa)
   
          0.578
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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