STRINGSTRING
R2601_01558 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01558" - ABC transporter related protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01558ABC transporter related protein (816 aa)    
Predicted Functional Partners:
R2601_01563
Ribose ABC transporter permease (335 aa)
 
   
 
0.955
R2601_01135
Probable sugar ABC transporter permease protein (355 aa)
 
 
0.853
R2601_00945
Bacterial inner-membrane translocator-Sodium-dicarboxylate symporter (344 aa)
 
 
0.852
R2601_01988
ABC transporter, membrane spanning protein (Ribose) (307 aa)
 
 
0.851
R2601_02653
Putative sugar ABC transporter permease protein (333 aa)
 
 
0.851
R2601_00940
Periplasmic binding protein/LacI transcriptional regulator (316 aa)
  0.850
R2601_00185
ABC sugar (Ribose) transporter, inner membrane subunit (335 aa)
 
 
0.850
R2601_20316
ABC sugar transporter, inner membrane subunit (356 aa)
 
 
0.840
R2601_01120
Probable ABC transporter sugar-binding protein (315 aa)
 
  0.831
R2601_06213
Ribose ABC transporter, substrate-binding protein (368 aa)
 
  0.819
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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