STRINGSTRING
R2601_01623 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01623" - Putative aromatic-ring hydroxylating dioxygenase, alpha-subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01623Putative aromatic-ring hydroxylating dioxygenase, alpha-subunit (418 aa)    
Predicted Functional Partners:
R2601_01628
Possible dioxygenase reductase subunit (362 aa)
 
 
  0.990
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
 
 
  0.956
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
 
 
  0.951
R2601_18653
Possible dioxygenase reductase subunit (360 aa)
 
 
  0.932
R2601_01613
2,4-dienoyl-CoA reductase (NADPH) protein (678 aa)
 
 
  0.861
R2601_06388
Putative ferredoxin (113 aa)
 
  0.838
R2601_08191
Nitrite reductase small subunit (110 aa)
   
  0.791
R2601_00730
Sarcosine oxidase, alpha subunit family protein (980 aa)
 
 
  0.785
R2601_18685
Sarcosine oxidase delta subunit (102 aa)
 
   
  0.776
R2601_10194
Sarcosine oxidase, delta subunit family protein (107 aa)
 
   
  0.775
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]