STRINGSTRING
R2601_01643 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01643" - Oxidoreductase, NAD-binding site in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01643Oxidoreductase, NAD-binding site (440 aa)    
Predicted Functional Partners:
R2601_01653
Dihydrodipicolinate synthetase (300 aa)
 
          0.976
R2601_01658
Transcriptional regulator, GntR family protein (240 aa)
 
          0.960
R2601_01648
Aldehyde dehydrogenase (497 aa)
 
          0.950
R2601_01673
ABC Glycine betaine/L-proline transporter, periplasmic ligand binding protein (329 aa)
 
          0.650
R2601_01663
ABC Glycine betaine/L-proline transporter, ATPase subunit (359 aa)
              0.606
R2601_01668
ABC Glycine betaine/L-proline transporter, inner membrane subunit (328 aa)
              0.580
R2601_01678
Transcriptional regulator, AraC family protein (317 aa)
 
          0.571
R2601_01633
Trimethylamine methyltransferase MttB-like protein (490 aa)
 
          0.464
R2601_16947
Uncharacterized protein (95 aa)
   
          0.427
R2601_00025
Dihydrodipicolinate synthase (292 aa)
              0.422
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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