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R2601_01658 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01658" - Transcriptional regulator, GntR family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01658Transcriptional regulator, GntR family protein (240 aa)    
Predicted Functional Partners:
R2601_01653
Dihydrodipicolinate synthetase (300 aa)
 
          0.972
R2601_01643
Oxidoreductase, NAD-binding site (440 aa)
 
          0.960
R2601_01648
Aldehyde dehydrogenase (497 aa)
 
          0.896
R2601_15712
Transcriptional Regulator, GntR family protein (213 aa)
   
          0.757
R2601_22696
Transcriptional regulator, GntR family protein (162 aa)
   
          0.747
R2601_05703
Regulatory protein GntR, HTH (222 aa)
   
          0.743
R2601_04103
Uncharacterized protein (280 aa)
   
          0.743
R2601_00005
Transcriptional regulator, GntR family protein (81 aa)
   
          0.741
R2601_13274
Transcriptional regulator, GntR family protein (219 aa)
   
          0.736
R2601_06018
GntR family transcriptional regulator (226 aa)
   
          0.730
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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