STRINGSTRING
R2601_01713 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01713" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01713Uncharacterized protein (241 aa)    
Predicted Functional Partners:
R2601_01718
Dihydroxy-acid dehydratase (577 aa)
 
          0.930
R2601_01733
TRAP-type mannitol/chloroaromatic compound transport system, small permease component (173 aa)
 
          0.852
R2601_01723
Uncharacterized protein (53 aa)
              0.840
R2601_01728
TRAP dicarboxylate transporter, DctM subunit (438 aa)
              0.821
R2601_25556
KDPG/KHG bifunctional aldolase (215 aa)
     
    0.766
R2601_01743
Transcriptional regulatory protein (235 aa)
 
          0.761
R2601_23118
4-hydroxy-4-methyl-2-oxoglutarate aldolase, putative (225 aa)
 
          0.736
R2601_01708
NAD-dependent aldehyde dehydrogenase (504 aa)
 
          0.711
R2601_01738
TRAP dicarboxylate family transporter, DctP subunit (340 aa)
 
          0.683
R2601_26996
ATP-dependent RNA helicase RhlE (502 aa)
     
 
  0.645
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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