STRINGSTRING
R2601_01728 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01728" - TRAP dicarboxylate transporter, DctM subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01728TRAP dicarboxylate transporter, DctM subunit (438 aa)    
Predicted Functional Partners:
R2601_01738
TRAP dicarboxylate family transporter, DctP subunit (340 aa)
 
   
  0.997
R2601_01733
TRAP-type mannitol/chloroaromatic compound transport system, small permease component (173 aa)
   
    0.996
R2601_06268
Extracellular solute-binding protein, family 7 ; Part of the tripartite ATP-independent periplasmic (TRAP) transport system (344 aa)
 
   
  0.954
R2601_21632
Bacterial extracellular solute-binding protein, family 7 ; Part of the tripartite ATP-independent periplasmic (TRAP) transport system (361 aa)
 
   
  0.953
R2601_25416
Extracellular solute-binding protein, family 7 ; Part of the tripartite ATP-independent periplasmic (TRAP) transport system (353 aa)
 
   
  0.951
R2601_05313
TRAP dicarboxylate family transporter, DctP subunit (347 aa)
 
   
  0.940
R2601_01270
TRAP transporter, DctP family, putative ; Part of the tripartite ATP-independent periplasmic (TRAP) transport system (351 aa)
 
   
  0.915
R2601_25421
Uncharacterized protein (265 aa)
   
  0.869
R2601_05308
TRAP dicarboxylate family transporter, DctQ subunit (186 aa)
   
    0.860
R2601_01723
Uncharacterized protein (53 aa)
              0.845
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]