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R2601_01863 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01863" - Transcriptional regulator, AraC family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01863Transcriptional regulator, AraC family protein (348 aa)    
Predicted Functional Partners:
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
       
      0.734
R2601_24475
Type I secretion target repeat protein (1142 aa)
 
          0.626
R2601_02328
Putative transcriptional regulator (301 aa)
 
          0.601
R2601_01888
Hydrolase, alpha/beta hydrolase fold family protein (662 aa)
 
          0.597
R2601_01868
Possible CAAX amino terminal protease family protein (255 aa)
              0.596
R2601_01883
Uncharacterized protein (642 aa)
 
          0.590
R2601_17569
Uncharacterized protein (640 aa)
   
          0.551
R2601_01873
Uncharacterized protein (199 aa)
   
        0.546
R2601_13000
Two-component hybrid sensor and regulator (772 aa)
   
 
 
  0.496
R2601_22512
Transcriptional regulator, LysR family protein (301 aa)
     
   
  0.467
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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