STRINGSTRING
R2601_01908 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01908" - Putative signal peptide protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01908Putative signal peptide protein (193 aa)    
Predicted Functional Partners:
R2601_01898
TRAP-type C4-dicarboxylate transport system, large permease component (437 aa)
 
 
  0.988
R2601_01903
Uncharacterized protein (188 aa)
 
          0.980
R2601_17429
TRAP dicarboxylate family transporter, DctM subunit (437 aa)
 
 
  0.949
R2601_01913
TRAP-T family transporter, periplasmic binding protein (124 aa)
 
          0.943
R2601_17434
Uncharacterized protein (176 aa)
 
   
    0.871
R2601_07668
TRAP dicarboxylate transporter, DctM subunit (427 aa)
 
 
  0.860
R2601_06113
Uncharacterized protein (433 aa)
 
 
  0.846
R2601_19939
Uncharacterized protein (430 aa)
 
 
  0.838
R2601_13324
Uncharacterized protein (425 aa)
 
 
  0.812
R2601_13174
TRAP-T family transporter, DctM (12 TMs) subunit (426 aa)
 
 
  0.811
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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