STRINGSTRING
R2601_01913 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01913" - TRAP-T family transporter, periplasmic binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01913TRAP-T family transporter, periplasmic binding protein (124 aa)    
Predicted Functional Partners:
R2601_01908
Putative signal peptide protein (193 aa)
 
          0.943
R2601_01903
Uncharacterized protein (188 aa)
   
          0.773
R2601_17439
Bacterial extracellular solute-binding protein, family 7 (323 aa)
   
          0.719
R2601_01898
TRAP-type C4-dicarboxylate transport system, large permease component (437 aa)
   
          0.672
R2601_01923
N-methylhydantoinase (ATP-hydrolyzing) A 1 (685 aa)
              0.644
R2601_01918
N-methylhydantoinase B (573 aa)
              0.644
R2601_19929
Putative ABC transporter periplasmic solute-binding protein (324 aa)
   
          0.600
R2601_17429
TRAP dicarboxylate family transporter, DctM subunit (437 aa)
   
          0.554
R2601_19954
Predicted membrane protein (139 aa)
   
          0.515
R2601_27293
Uncharacterized protein (136 aa)
   
          0.472
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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