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R2601_01963 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01963" - Transcriptional Regulator, TetR family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01963Transcriptional Regulator, TetR family protein (206 aa)    
Predicted Functional Partners:
R2601_01958
Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein (392 aa)
 
          0.778
R2601_01948
Branched amino acid ABC transporter (Permease) (327 aa)
 
          0.526
R2601_12660
Uncharacterized protein (190 aa)
   
          0.482
R2601_08001
Uncharacterized protein (400 aa)
   
          0.470
R2601_01943
ABC transporter ATP-binding protein (254 aa)
              0.464
R2601_01953
Putative ABC transporter, permease protein (289 aa)
              0.462
R2601_01938
Branched chain amino acid ABC transporter ATP-binding protein (239 aa)
              0.462
R2601_07733
Uncharacterized protein (177 aa)
   
          0.445
R2601_01933
Peptidase, M19 family protein (322 aa)
              0.442
R2601_10864
Pyridoxamine 5’-phosphate oxidase family protein (200 aa)
   
          0.402
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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