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R2601_01973 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01973" - Short chain dehydrogenase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01973Short chain dehydrogenase (241 aa)    
Predicted Functional Partners:
R2601_01978
Ribitol kinase (542 aa)
 
        0.856
R2601_02008
Xylitol dehydrogenase (350 aa)
 
 
    0.815
R2601_02003
Transcriptional regulator, AraC family protein (294 aa)
 
          0.771
R2601_23148
Agropine synthesis reductase (238 aa)
 
          0.740
R2601_01998
ABC transporter, substrate binding protein (Ribose) (304 aa)
 
          0.727
R2601_01983
Ribitol 2-dehydrogenase (243 aa)
       
0.703
R2601_01968
Uncharacterized protein (67 aa)
              0.640
R2601_01993
Ribose import ATP-binding protein RbsA ; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system (500 aa)
 
          0.603
R2601_01015
L-idonate 5-dehydrogenase (349 aa)
 
 
    0.580
R2601_01988
ABC transporter, membrane spanning protein (Ribose) (307 aa)
 
          0.563
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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