STRINGSTRING
R2601_01978 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01978" - Ribitol kinase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01978Ribitol kinase (542 aa)    
Predicted Functional Partners:
R2601_01983
Ribitol 2-dehydrogenase (243 aa)
 
   
    0.983
R2601_01973
Short chain dehydrogenase (241 aa)
 
        0.856
R2601_17374
Ribulose-phosphate 3-epimerase (233 aa)
     
    0.797
R2601_22681
2-dehydro-3-deoxygluconokinase (308 aa)
       
  0.762
R2601_17454
Rhamnulose-1-phosphate aldolase (280 aa)
   
 
  0.739
R2601_00910
Ribose-5-phosphate isomerase B (153 aa)
       
    0.739
R2601_23715
Uncharacterized protein (264 aa)
   
 
  0.737
R2601_18128
Class II aldolase/adducin-like protein (256 aa)
   
 
  0.737
R2601_02593
Uncharacterized protein (243 aa)
   
 
  0.737
R2601_02533
Uncharacterized protein (244 aa)
   
 
  0.737
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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