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R2601_02003 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02003" - Transcriptional regulator, AraC family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
Databases
Textmining
[Homology]
Score
R2601_02003Transcriptional regulator, AraC family protein (294 aa)    
Predicted Functional Partners:
R2601_01998
ABC transporter, substrate binding protein (Ribose) (304 aa)
 
          0.885
R2601_01973
Short chain dehydrogenase (241 aa)
 
          0.771
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (280 aa)
 
            0.757
R2601_02008
Xylitol dehydrogenase (350 aa)
 
          0.690
R2601_01993
Ribose import ATP-binding protein RbsA ; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system (500 aa)
 
          0.665
R2601_26526
ABC sorbitol/mannitol transporter, inner membrane subunit (276 aa)
 
          0.574
R2601_01983
Ribitol 2-dehydrogenase (243 aa)
 
          0.541
R2601_02328
Putative transcriptional regulator (301 aa)
   
          0.526
R2601_03083
Transcriptional regulator, AraC family protein (313 aa)
   
          0.523
R2601_01988
ABC transporter, membrane spanning protein (Ribose) (307 aa)
 
          0.510
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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