STRINGSTRING
R2601_02028 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02028" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02028Uncharacterized protein (215 aa)    
Predicted Functional Partners:
R2601_02033
Uncharacterized protein (162 aa)
              0.859
R2601_11901
Probable cobalamin synthesis protein, P47K family (406 aa)
 
        0.828
R2601_09492
Putative binding protein dependent transport lipoprotein (450 aa)
   
          0.620
R2601_11906
Uncharacterized protein (102 aa)
 
          0.559
R2601_21186
Zinc uptake regulation protein (163 aa)
 
          0.528
R2601_05883
CobW (351 aa)
   
        0.523
R2601_26336
Uncharacterized protein (378 aa)
   
          0.502
R2601_09497
Putative integral membrane binding protein dependent transport protein (413 aa)
   
          0.492
R2601_05483
Putative peroxidase (569 aa)
   
          0.465
R2601_13000
Two-component hybrid sensor and regulator (772 aa)
   
          0.445
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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