STRINGSTRING
R2601_02078 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02078" - OPINE OXIDASE SUBUNIT A in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02078OPINE OXIDASE SUBUNIT A (465 aa)    
Predicted Functional Partners:
R2601_02083
Uncharacterized protein (108 aa)
 
          0.973
R2601_02103
Sarcosine oxidase, subunit beta (367 aa)
          0.942
R2601_02093
Hydantoin utilization protein a (685 aa)
              0.862
R2601_02088
Hydantoin utilization protein b (661 aa)
              0.859
R2601_02133
Probable oligopeptide ABC transporter, substrate-binding protein (536 aa)
 
          0.734
R2601_02168
Haloalkanoic acid dehalogenase (221 aa)
 
          0.709
R2601_02128
Putative ABC Transporter, permease protein (319 aa)
 
          0.700
R2601_02153
Uncharacterized protein (277 aa)
   
        0.654
R2601_02098
Transcriptional regulator (301 aa)
              0.608
R2601_02178
Uncharacterized protein (331 aa)
   
          0.603
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]