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R2601_02108 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02108" - AgaE protein, conversion of agropinic acid to mannopinic acid in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02108AgaE protein, conversion of agropinic acid to mannopinic acid (441 aa)    
Predicted Functional Partners:
R2601_02113
Putative AsnC (Lrp)-family transcriptional activator (164 aa)
 
          0.806
R2601_02153
Uncharacterized protein (277 aa)
 
          0.787
R2601_02168
Haloalkanoic acid dehalogenase (221 aa)
 
          0.783
R2601_02133
Probable oligopeptide ABC transporter, substrate-binding protein (536 aa)
 
          0.780
R2601_02178
Uncharacterized protein (331 aa)
   
          0.775
R2601_02128
Putative ABC Transporter, permease protein (319 aa)
 
          0.759
R2601_02123
Putative ABC Transporter, permease protein (289 aa)
 
          0.752
R2601_02118
Putative ABC Transporter, ATP-binding protein (554 aa)
 
          0.713
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
 
   
    0.625
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
 
   
    0.624
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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