STRINGSTRING
R2601_02163 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02163" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02163Uncharacterized protein (144 aa)    
Predicted Functional Partners:
R2601_02158
Acetylornithine deacetylase (365 aa)
   
        0.865
R2601_02148
Uncharacterized protein (456 aa)
 
          0.824
R2601_02173
Probable FAD-dependent oxidoreductase protein (429 aa)
 
          0.795
R2601_02168
Haloalkanoic acid dehalogenase (221 aa)
 
          0.763
R2601_02153
Uncharacterized protein (277 aa)
 
          0.690
R2601_02138
Uncharacterized protein (246 aa)
 
          0.661
R2601_02133
Probable oligopeptide ABC transporter, substrate-binding protein (536 aa)
 
          0.572
R2601_02143
D-3-phosphoglycerate dehydrogenase (300 aa)
   
        0.549
R2601_02123
Putative ABC Transporter, permease protein (289 aa)
 
          0.489
R2601_02178
Uncharacterized protein (331 aa)
 
          0.459
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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