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R2601_02228 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02228" - Transcriptional regulator, LysR family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02228Transcriptional regulator, LysR family protein (300 aa)    
Predicted Functional Partners:
R2601_02223
P-450 monoxygenase (391 aa)
 
          0.707
R2601_02588
Transcriptional regulator (334 aa)
   
          0.599
R2601_22497
Probable transcriptional regulator transcription regulator protein (285 aa)
   
          0.541
R2601_02218
Ferredoxin, 2Fe-2S (107 aa)
              0.535
R2601_02213
FAD-dependent pyridine nucleotide-disulphide oxidoreductase (392 aa)
              0.533
R2601_14295
Putative glycosyltransferase (421 aa)
   
          0.463
R2601_23745
Predicted glycosyltransferase (266 aa)
   
          0.436
R2601_02208
Uncharacterized protein (326 aa)
              0.412
R2601_02203
Uncharacterized protein (165 aa)
              0.412
R2601_02198
TRAP transporter, DctM subunit (432 aa)
              0.412
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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