STRINGSTRING
R2601_02303 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02303" - Probable oxidoreductase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02303Probable oxidoreductase (213 aa)    
Predicted Functional Partners:
R2601_02293
Probable oxidoreductase (726 aa)
  0.998
R2601_02298
Possible oxidoreductase, molybdopterin-binding subunit (316 aa)
 
  0.997
R2601_01225
Probable carbon monoxide dehydrogenase large chain (793 aa)
  0.972
R2601_08843
Xanthine dehydrogenase family protein, large subunit (763 aa)
  0.968
R2601_21952
Xanthine dehydrogenase family protein, medium subunit (282 aa)
  0.966
R2601_26426
Carbon monoxide dehydrogenase, large subunit (489 aa)
  0.957
R2601_01235
Probable carbon monoxide dehydrogenase medium chain (277 aa)
  0.952
R2601_03793
Carbon-monoxide dehydrogenase medium chain (316 aa)
  0.949
R2601_25721
Probable oxidoreductase (938 aa)
 
  0.939
R2601_10359
Xanthine dehydrogenase, A subunit (460 aa)
 
 
 
0.939
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]