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R2601_02338 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02338" - ABC transporter, substrate binding protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02338ABC transporter, substrate binding protein (Ferrichrome) (278 aa)    
Predicted Functional Partners:
R2601_02348
ABC Fe+3 hydroxamate (Ferrichrome) transporter, ATPase subunit (257 aa)
 
  0.997
R2601_02343
ABC Fe+3 hydroxamate (Ferrichrome) transporter, fused inner membrane subunits (645 aa)
 
 
  0.996
R2601_02333
TonB dependent, hydroxamate-type ferrisiderophore, outer membrane receptor (689 aa)
 
 
  0.973
R2601_02048
Probable iron ABC transporter, ATP-binding protein (254 aa)
   
  0.931
R2601_02353
ABC multidrug efflux transporter, fused ATPase and inner membrane subunits (566 aa)
 
     
  0.924
R2601_21091
ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit (249 aa)
   
  0.887
R2601_16270
ABC ferric siderophore transporter, ATPase subunit (251 aa)
 
   
  0.887
R2601_27268
Permease protein of ABC transporter (359 aa)
   
 
  0.872
R2601_21096
ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit (325 aa)
   
 
  0.871
R2601_02053
Probable iron ABC transporter, permease protein (345 aa)
   
 
  0.870
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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