STRINGSTRING
R2601_02448 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02448" - Putative transporter in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02448Putative transporter (282 aa)    
Predicted Functional Partners:
R2601_02443
ABC transporter ATP-binding protein (281 aa)
 
  0.989
R2601_02453
Uncharacterized protein (345 aa)
 
   
    0.955
R2601_02383
ABC transporter, nucleotide binding/ATPase protein (Nitrate) (249 aa)
 
  0.906
R2601_05188
ABC transporter related protein (265 aa)
 
  0.904
R2601_21557
ABC transporter ATP-binding protein (272 aa)
 
  0.896
R2601_11804
ABC transporter, ATP-binding protein (267 aa)
 
  0.892
R2601_20124
ABC transporter, ATPase subunit (266 aa)
 
  0.891
R2601_05183
Uncharacterized protein (329 aa)
 
 
  0.876
R2601_02378
Uncharacterized protein (332 aa)
 
   
    0.874
R2601_11784
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components TauA (330 aa)
 
 
  0.819
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (9%) [HD]