STRINGSTRING
R2601_02453 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02453" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02453Uncharacterized protein (345 aa)    
Predicted Functional Partners:
R2601_02448
Putative transporter (282 aa)
 
   
    0.955
R2601_02443
ABC transporter ATP-binding protein (281 aa)
 
   
    0.911
R2601_02393
Binding-protein-dependent transport systems inner membrane component (256 aa)
 
   
    0.876
R2601_11789
ABC transporter, permease protein (279 aa)
 
   
    0.825
R2601_20129
ABC transporter, inner membrane subunit (254 aa)
 
   
    0.813
R2601_11794
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit (286 aa)
 
   
    0.807
R2601_20124
ABC transporter, ATPase subunit (266 aa)
 
   
    0.793
R2601_11804
ABC transporter, ATP-binding protein (267 aa)
 
   
    0.780
R2601_05193
Probable permease of ABC transporter (523 aa)
 
   
    0.723
R2601_05188
ABC transporter related protein (265 aa)
 
   
    0.559
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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