STRINGSTRING
R2601_02478 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02478" - Dihydrodipicolinate synthase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02478Dihydrodipicolinate synthase (295 aa)    
Predicted Functional Partners:
asd
Aspartate-beta-semialdehyde dehydrogenase ; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate (340 aa)
 
 
  0.994
R2601_08626
4-hydroxy-tetrahydrodipicolinate reductase ; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (226 aa)
 
 
  0.988
R2601_02473
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding subunit (326 aa)
 
   
  0.908
R2601_00555
Dihydrodipicolinate synthase (309 aa)
 
   
    0.901
R2601_17719
Homoserine dehydrogenase (428 aa)
 
 
  0.887
R2601_17913
Aspartokinase (412 aa)
 
 
  0.882
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
   
  0.858
R2601_02468
4-(phosphohydroxy)-L-threonine dehydrogenase ; Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) (329 aa)
 
   
  0.848
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
     
 
  0.818
R2601_02483
TRAP-T family transporter, large (12 TMs) inner membrane subunit (494 aa)
              0.818
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]