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R2601_02488 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02488" - TRAP-T family transporter, periplasmic binding protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02488TRAP-T family transporter, periplasmic binding protein (319 aa)    
Predicted Functional Partners:
R2601_02483
TRAP-T family transporter, large (12 TMs) inner membrane subunit (494 aa)
 
  0.997
R2601_19969
Uncharacterized protein (507 aa)
 
  0.954
R2601_19924
TRAP-T family transporter, fused small and large inner membrane subunits (501 aa)
 
  0.954
R2601_06083
Uncharacterized protein (505 aa)
 
  0.954
R2601_05998
Uncharacterized protein (496 aa)
 
  0.954
R2601_00140
TctA protein (505 aa)
 
  0.954
R2601_02493
TRAP-T family transporter, small (4 TMs) inner membrane subunit (151 aa)
              0.724
R2601_02468
4-(phosphohydroxy)-L-threonine dehydrogenase ; Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) (329 aa)
 
          0.580
R2601_02503
Uncharacterized protein (340 aa)
 
          0.571
R2601_02478
Dihydrodipicolinate synthase (295 aa)
              0.561
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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