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R2601_02508 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02508" - Transcriptional regulator, GntR family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02508Transcriptional regulator, GntR family protein (236 aa)    
Predicted Functional Partners:
R2601_02503
Uncharacterized protein (340 aa)
 
          0.880
R2601_02498
Iron-containing alcohol dehydrogenase (372 aa)
 
          0.772
R2601_01753
Transcriptional regulator, GntR family protein (243 aa)
   
          0.772
R2601_22232
Putative regulatory protein, GntR family (241 aa)
   
          0.752
R2601_00255
FAD linked oxidase (946 aa)
   
 
  0.733
R2601_01150
Probable transcriptional regulator protein, GntR family (240 aa)
   
          0.711
R2601_19412
Transcriptional regulator, GntR family protein (214 aa)
   
   
  0.682
R2601_14750
NADP-dependent malic enzyme (751 aa)
       
    0.653
R2601_10082
Malic enzyme (759 aa)
       
    0.653
R2601_23640
Putative D-lactate dehydrogenase (Cytochrome), FAD/FMN-containing oxidoreductase (457 aa)
   
 
    0.626
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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