STRINGSTRING
R2601_02523 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02523" - Probable dienelactone hydrolase protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02523Probable dienelactone hydrolase protein (297 aa)    
Predicted Functional Partners:
R2601_12825
Putative cycloisomerase (375 aa)
     
 
  0.818
R2601_12528
Mandelate racemase/muconate lactonizing enzyme family protein (329 aa)
     
 
  0.598
R2601_02998
Isomerase/lactonizing enzyme (382 aa)
   
 
  0.576
R2601_27141
Dihydropteroate synthase, DHPS-Homocysteine S-methyltransferase-Cobalamin-dependent methionine (1256 aa)
     
 
    0.495
R2601_03208
Uncharacterized protein (378 aa)
     
 
  0.477
R2601_13129
Protocatechuate 3,4-dioxygenase beta subunit (241 aa)
   
 
  0.437
R2601_13124
Protocatechuate 3,4-dioxygenase alpha subunit (230 aa)
   
 
  0.435
R2601_10859
Twin-arginine translocation pathway signal (252 aa)
   
 
  0.435
R2601_07966
Alcohol dehydrogenase, iron-containing (383 aa)
   
 
  0.426
R2601_02498
Iron-containing alcohol dehydrogenase (372 aa)
   
 
  0.426
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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