STRINGSTRING
R2601_02533 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02533" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02533Uncharacterized protein (244 aa)    
Predicted Functional Partners:
R2601_02538
3-hydroxybutyryl-CoA dehydrogenase (473 aa)
       
    0.849
R2601_02543
Uncharacterized protein (306 aa)
              0.819
R2601_01978
Ribitol kinase (542 aa)
   
 
  0.737
R2601_17499
Uncharacterized protein (464 aa)
       
  0.699
R2601_17097
Xylulokinase (483 aa)
       
  0.699
R2601_02638
Putative L-xylulose kinase protein (512 aa)
       
  0.699
R2601_00960
Carbohydrate kinase, FGGY (535 aa)
       
  0.699
R2601_20586
Putative ribulose bisphosphate carboxylaseoxygenase,large subunit (421 aa)
       
  0.674
R2601_17389
Ribulose-bisphosphate carboxylase form I large subunit CbbL (487 aa)
       
  0.674
R2601_01115
Ribulose bisphosphate carboxylaseoxygenase, large subunit protein (421 aa)
       
  0.674
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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