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R2601_02538 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02538" - 3-hydroxybutyryl-CoA dehydrogenase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_025383-hydroxybutyryl-CoA dehydrogenase (473 aa)    
Predicted Functional Partners:
R2601_02543
Uncharacterized protein (306 aa)
 
   
  0.988
R2601_02553
Carnitinyl-CoA dehydratase (260 aa)
 
  0.984
R2601_25786
Acetyl-CoA acetyltransferase (403 aa)
   
  0.980
R2601_20049
Thiolase (384 aa)
   
  0.980
R2601_17724
Acetyl-CoA C-acetyltransferase (390 aa)
   
  0.980
R2601_12171
Beta-ketothiolase (392 aa)
   
  0.980
R2601_11851
Acetyl-CoA acetyltransferase (391 aa)
   
  0.980
R2601_06493
Beta-ketothiolase protein (399 aa)
   
  0.980
R2601_04308
Beta-ketothiolase (428 aa)
   
  0.980
R2601_04023
Acetyl-CoA acetyltransferase (325 aa)
   
  0.980
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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