STRINGSTRING
R2601_02568 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02568" - ABC transporter, permease protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02568ABC transporter, permease protein (272 aa)    
Predicted Functional Partners:
R2601_02573
ABC transporter, permease protein (269 aa)
   
    0.997
R2601_02578
ABC transporter, binding protein (370 aa)
 
   
    0.993
R2601_20401
Spermidine/putrescine ABC transporter, permease protein (288 aa)
 
          0.779
R2601_17544
Probable permease of ABC transporter (256 aa)
   
          0.778
R2601_17539
Uncharacterized protein (285 aa)
          0.776
R2601_02583
ABC transporter, ATP-binding protein (350 aa)
 
          0.774
R2601_11414
ABC putrescine transporter, inner membrane subunit (306 aa)
          0.773
R2601_01070
ABC transporter permease protein (305 aa)
          0.772
R2601_27011
Probable spermidineputrescine ABC transporter permease protein (328 aa)
          0.771
R2601_13289
Putrescine ABC transporter, permease protein (296 aa)
          0.770
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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