STRINGSTRING
R2601_02588 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02588" - Transcriptional regulator in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02588Transcriptional regulator (334 aa)    
Predicted Functional Partners:
R2601_02598
Gamma-butyrobetaine,2-oxoglutarate dioxygenase (379 aa)
 
          0.901
R2601_02593
Uncharacterized protein (243 aa)
              0.859
R2601_02603
Transcriptional Regulator, LysR family protein (297 aa)
 
       
0.721
R2601_21316
Transcriptional regulator, LysR family protein (300 aa)
   
          0.687
R2601_02583
ABC transporter, ATP-binding protein (350 aa)
 
          0.661
R2601_16660
Transcriptional regulator, LysR family protein (286 aa)
   
          0.645
R2601_02268
Putative transcriptional regulator, LysR family protein (308 aa)
   
          0.620
R2601_01205
Transcriptional regulator (309 aa)
   
          0.608
R2601_02228
Transcriptional regulator, LysR family protein (300 aa)
   
          0.599
R2601_05763
Transcriptional regulator (305 aa)
   
          0.592
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (15%) [HD]