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R2601_02598 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02598" - Gamma-butyrobetaine,2-oxoglutarate dioxygenase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02598Gamma-butyrobetaine,2-oxoglutarate dioxygenase (379 aa)    
Predicted Functional Partners:
R2601_02593
Uncharacterized protein (243 aa)
 
          0.940
R2601_02588
Transcriptional regulator (334 aa)
 
          0.901
R2601_02603
Transcriptional Regulator, LysR family protein (297 aa)
 
          0.883
R2601_10909
Taurine ABC transporter, periplasmic taurine-binding protein (331 aa)
   
 
  0.712
R2601_02538
3-hydroxybutyryl-CoA dehydrogenase (473 aa)
 
        0.684
R2601_21562
ABC transporter permease protein (277 aa)
   
 
  0.673
R2601_20129
ABC transporter, inner membrane subunit (254 aa)
   
 
  0.673
R2601_11794
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit (286 aa)
   
 
  0.673
R2601_11789
ABC transporter, permease protein (279 aa)
   
 
  0.673
R2601_10899
Taurine ABC transporter, permease protein (421 aa)
   
 
  0.673
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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