STRINGSTRING
R2601_02863 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02863" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02863Uncharacterized protein (110 aa)    
Predicted Functional Partners:
secY
Protein translocase subunit SecY ; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (447 aa)
     
      0.802
R2601_23208
Cytochrome-c oxidase chain II/c (319 aa)
     
 
  0.765
R2601_02868
Glyoxalase family protein (249 aa)
              0.632
R2601_21507
ABC peptide transporter, periplasmic binding protein (539 aa)
   
          0.598
R2601_25091
Phosphatidate cytidylyltransferase (262 aa)
     
      0.550
R2601_04713
Uncharacterized protein (949 aa)
     
        0.540
R2601_03963
Uncharacterized protein (294 aa)
 
      0.529
R2601_21487
Transcription antitermination protein (200 aa)
   
          0.516
R2601_18208
Uncharacterized protein (285 aa)
 
      0.502
R2601_14070
Uncharacterized protein (719 aa)
   
          0.497
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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