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R2601_03003 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_03003" - ABC transporter, substrate binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_03003ABC transporter, substrate binding protein (Oligopeptide) (521 aa)    
Predicted Functional Partners:
R2601_02998
Isomerase/lactonizing enzyme (382 aa)
 
          0.920
R2601_03038
ABC transporter, membrane spanning protein (300 aa)
 
   
    0.908
R2601_03043
ABC transporter, membrane spanning protein (305 aa)
 
   
    0.898
R2601_03028
ABC transporter, nucleotide binding/ATPase protein (126 aa)
 
   
    0.848
R2601_05818
Oligopeptide/dipeptide ABC transporter, permease protein (298 aa)
 
   
    0.798
R2601_20771
ABC transporter permease protein (312 aa)
 
   
    0.779
R2601_15697
Oligopeptide ABC transporter permease protein (299 aa)
 
   
    0.770
R2601_19729
ABC transporter, membrane spanning protein (Oligopeptide) (314 aa)
 
   
    0.760
R2601_01190
Putative oligopeptide ABC transporter, permease component (270 aa)
 
   
    0.741
R2601_20766
ABC transporter permease protein (323 aa)
 
   
    0.711
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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