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R2601_03173 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_03173" - Polygalacturonase-like protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_03173Polygalacturonase-like protein (167 aa)    
Predicted Functional Partners:
kduI
DKI isomerase ; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate (375 aa)
 
          0.871
R2601_03098
ABC transporter, membrane spanning protein (Sugar) (307 aa)
 
          0.829
R2601_03088
ABC transporter, membrane spanning protein (Sugar) (293 aa)
 
          0.821
R2601_03158
ABC transporter, substrate binding protein (Sugar) (120 aa)
 
          0.770
R2601_22247
Putative altronate dehydrogenase (368 aa)
 
     
  0.691
R2601_03078
Pectin degradation protein (118 aa)
   
          0.674
R2601_03083
Transcriptional regulator, AraC family protein (313 aa)
 
          0.662
rhaA
L-rhamnose isomerase (415 aa)
   
          0.636
R2601_22252
Altronate hydrolase (498 aa)
 
          0.632
R2601_03008
Uncharacterized protein (346 aa)
 
        0.617
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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