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kduI protein (Pelagibaca bermudensis) - STRING interaction network
"kduI" - DKI isomerase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduIDKI isomerase ; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate (375 aa)    
Predicted Functional Partners:
R2601_03288
2-deoxy-D-gluconate 3-dehydrogenase (247 aa)
 
  0.996
R2601_03613
Short-chain dehydrogenase/reductase SDR (244 aa)
 
 
  0.980
R2601_03173
Polygalacturonase-like protein (167 aa)
 
          0.871
R2601_22247
Putative altronate dehydrogenase (368 aa)
 
     
  0.855
R2601_22252
Altronate hydrolase (498 aa)
 
     
  0.838
R2601_03308
Uncharacterized protein (233 aa)
              0.829
R2601_03078
Pectin degradation protein (118 aa)
 
          0.824
uxuA
D-mannonate hydro-lyase ; Catalyzes the dehydration of D-mannonate (404 aa)
 
     
  0.815
R2601_03283
Uncharacterized protein (32 aa)
              0.738
R2601_22681
2-dehydro-3-deoxygluconokinase (308 aa)
   
 
  0.734
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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