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R2601_03343 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_03343" - Gamma-BHC dehydrochlorinase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_03343Gamma-BHC dehydrochlorinase (188 aa)    
Predicted Functional Partners:
R2601_06153
Uncharacterized protein (171 aa)
   
          0.687
R2601_03663
Uncharacterized protein (137 aa)
   
          0.651
R2601_17529
Uncharacterized protein (215 aa)
   
          0.626
R2601_05363
Uncharacterized protein (379 aa)
   
          0.616
R2601_20044
Uncharacterized protein (126 aa)
   
          0.592
R2601_02433
Uncharacterized protein (390 aa)
   
          0.571
R2601_03338
Uncharacterized protein (176 aa)
              0.549
R2601_20049
Thiolase (384 aa)
   
          0.548
R2601_04923
Uncharacterized protein (333 aa)
   
          0.517
R2601_03668
Lipid-transfer protein (279 aa)
   
          0.505
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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