STRINGSTRING
R2601_03603 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_03603" - Acyl-CoA dehydrogenase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_03603Acyl-CoA dehydrogenase (327 aa)    
Predicted Functional Partners:
R2601_12730
AMP-binding enzyme (654 aa)
   
 
    0.980
R2601_18288
AMP-binding protein (541 aa)
 
 
    0.979
R2601_01080
Acyl-CoA synthase (537 aa)
 
 
    0.979
R2601_10072
Possible acyl-CoA sythetase (633 aa)
     
 
    0.979
R2601_25791
Enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase (733 aa)
   
 
    0.978
R2601_20054
CoA-binding protein (706 aa)
       
    0.977
R2601_02558
Acyl-CoA synthetase, putative (681 aa)
       
    0.977
R2601_03598
Aminoglycoside phosphotransferase (239 aa)
 
    0.971
R2601_02423
Acyl-CoA synthase (494 aa)
   
 
    0.970
R2601_04043
Acyl-CoA synthetase (656 aa)
     
 
    0.959
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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