STRINGSTRING
R2601_03628 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_03628" - Putative hydroxymethylglutaryl-CoA lyase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_03628Putative hydroxymethylglutaryl-CoA lyase (337 aa)    
Predicted Functional Partners:
R2601_03633
Enoyl-CoA hydratase (211 aa)
   
 
  0.961
leuC
Isopropylmalate isomerase ; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate (473 aa)
   
  0.948
R2601_09148
3-isopropylmalate dehydratase large subunit ; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate (463 aa)
   
  0.948
R2601_21722
Methylcrotonyl-CoA carboxylase, beta subunit (534 aa)
 
  0.922
leuB
Beta-IPM dehydrogenase ; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (367 aa)
   
  0.918
R2601_02068
Probable tartrate dehydrogenase protein (347 aa)
   
  0.918
R2601_14750
NADP-dependent malic enzyme (751 aa)
   
 
  0.900
R2601_10082
Malic enzyme (759 aa)
   
 
  0.900
R2601_21742
Enoyl-CoA hydratase (258 aa)
 
  0.884
R2601_08371
Dihydrolipoamide acetyltransferase (461 aa)
 
  0.877
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (11%) [HD]