STRINGSTRING
R2601_03668 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_03668" - Lipid-transfer protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_03668Lipid-transfer protein (279 aa)    
Predicted Functional Partners:
R2601_03663
Uncharacterized protein (137 aa)
 
 
    0.984
R2601_02428
Uncharacterized protein (115 aa)
 
 
    0.890
R2601_01548
Putative dehydrogenase (569 aa)
   
 
    0.785
R2601_20059
Uncharacterized protein (287 aa)
 
        0.713
R2601_20044
Uncharacterized protein (126 aa)
   
          0.712
R2601_04128
Putative racemase (413 aa)
   
          0.694
R2601_06153
Uncharacterized protein (171 aa)
   
          0.681
R2601_03673
Uncharacterized protein (36 aa)
              0.665
R2601_01085
Acetyl-CoA acetyltransferase (389 aa)
 
          0.661
R2601_20024
Probable short-chain dehydrogenase (306 aa)
 
          0.645
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]