STRINGSTRING
R2601_03858 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_03858" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_03858Uncharacterized protein (533 aa)    
Predicted Functional Partners:
R2601_03868
Uncharacterized protein (148 aa)
              0.859
R2601_06153
Uncharacterized protein (171 aa)
   
          0.752
R2601_03663
Uncharacterized protein (137 aa)
   
          0.701
R2601_20044
Uncharacterized protein (126 aa)
   
          0.679
R2601_04183
Cytochrome P450-like protein (391 aa)
   
          0.642
R2601_20049
Thiolase (384 aa)
   
          0.628
R2601_02433
Uncharacterized protein (390 aa)
   
          0.628
R2601_03668
Lipid-transfer protein (279 aa)
   
          0.611
R2601_06188
Uncharacterized protein (159 aa)
   
          0.605
R2601_03883
TRAP-T family transporter, DctM (12 TMs) subunit (246 aa)
              0.569
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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