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R2601_04053 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_04053" - Short-chain dehydrogenase/reductase SDR in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_04053Short-chain dehydrogenase/reductase SDR (266 aa)    
Predicted Functional Partners:
R2601_04058
Probable integral membrane efflux protein (413 aa)
              0.840
R2601_22701
Fumarylacetoacetate hydrolase family protein (280 aa)
       
    0.660
R2601_17449
Uncharacterized protein (231 aa)
       
    0.660
R2601_06238
Fumarylacetoacetase (413 aa)
       
    0.660
R2601_22252
Altronate hydrolase (498 aa)
       
    0.598
R2601_03203
Uncharacterized protein (237 aa)
 
          0.541
R2601_12825
Putative cycloisomerase (375 aa)
       
    0.532
R2601_12528
Mandelate racemase/muconate lactonizing enzyme family protein (329 aa)
       
    0.532
R2601_03208
Uncharacterized protein (378 aa)
       
    0.532
R2601_02998
Isomerase/lactonizing enzyme (382 aa)
       
    0.532
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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