STRINGSTRING
R2601_04058 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_04058" - Probable integral membrane efflux protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_04058Probable integral membrane efflux protein (413 aa)    
Predicted Functional Partners:
R2601_04053
Short-chain dehydrogenase/reductase SDR (266 aa)
              0.840
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
     
      0.547
R2601_26306
Diheme cytochrome c-type (299 aa)
     
      0.542
R2601_19839
Putative oxidoreductase (731 aa)
     
      0.542
R2601_08526
Isoquinoline 1-oxidoreductase, beta subunit, putative (745 aa)
     
      0.542
R2601_05258
Putative cytochrome C (450 aa)
     
      0.542
R2601_26426
Carbon monoxide dehydrogenase, large subunit (489 aa)
     
      0.540
R2601_26421
Carbon monoxide dehydrogenase, large subunit (315 aa)
     
      0.540
R2601_25721
Probable oxidoreductase (938 aa)
     
      0.540
R2601_08843
Xanthine dehydrogenase family protein, large subunit (763 aa)
     
      0.540
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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