STRINGSTRING
R2601_04128 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_04128" - Putative racemase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_04128Putative racemase (413 aa)    
Predicted Functional Partners:
R2601_19564
Methylmalonyl-CoA mutase (709 aa)
       
  0.838
R2601_10679
Methylmalonyl-CoA mutase (665 aa)
       
  0.838
R2601_04113
Beta-ketoacyl reductase (262 aa)
 
   
  0.835
R2601_03663
Uncharacterized protein (137 aa)
 
   
    0.794
R2601_02433
Uncharacterized protein (390 aa)
 
 
  0.786
R2601_18553
Enoyl-CoA hydratase/isomerase-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein (666 aa)
   
 
  0.784
R2601_17988
Enoyl-CoA hydratase (634 aa)
   
 
  0.784
R2601_20049
Thiolase (384 aa)
 
 
  0.752
R2601_04118
L-carnitine dehydratase/bile acid-inducible protein F (481 aa)
 
       
0.748
R2601_03623
Probable acyl-CoA dehydrogenase (395 aa)
 
 
  0.742
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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