STRINGSTRING
R2601_04218 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_04218" - MmgE/PrpD in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_04218MmgE/PrpD (150 aa)    
Predicted Functional Partners:
R2601_04228
Uncharacterized protein (178 aa)
              0.859
R2601_25256
Citrate synthase (432 aa)
   
  0.855
R2601_19959
Citrate synthase (259 aa)
   
  0.855
R2601_09178
Isocitrate lyase family protein (288 aa)
   
 
  0.778
R2601_04213
Uncharacterized protein (37 aa)
              0.759
R2601_04243
Uncharacterized protein (26 aa)
              0.649
R2601_21972
Aconitate hydratase ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (923 aa)
   
 
  0.560
acsA
Acyl-activating enzyme ; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA (656 aa)
   
   
  0.518
R2601_24804
Benzoate-coenzyme A ligase, putative (503 aa)
   
   
  0.518
R2601_21717
Acetyl-coenzyme A synthetase (524 aa)
   
   
  0.518
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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