STRINGSTRING
R2601_04343 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_04343" - Aspartate aminotransferase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_04343Aspartate aminotransferase (395 aa)    
Predicted Functional Partners:
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
   
 
    0.841
R2601_12990
Glutamate synthase, large subunit (1537 aa)
         
  0.835
R2601_18985
Bifunctional protein PutA ; Oxidizes proline to glutamate for use as a carbon and nitrogen source (1142 aa)
     
 
  0.835
R2601_27141
Dihydropteroate synthase, DHPS-Homocysteine S-methyltransferase-Cobalamin-dependent methionine (1256 aa)
     
 
    0.813
R2601_14750
NADP-dependent malic enzyme (751 aa)
   
 
  0.793
R2601_10082
Malic enzyme (759 aa)
   
 
  0.793
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
     
 
  0.773
R2601_26156
Isocitrate dehydrogenase [NADP] (405 aa)
     
  0.699
mdh
Malate dehydrogenase ; Catalyzes the reversible oxidation of malate to oxaloacetate (320 aa)
     
  0.651
ldh
L-lactate dehydrogenase (309 aa)
     
  0.651
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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