STRINGSTRING
R2601_04703 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_04703" - Polysaccharide biosynthesis protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_04703Polysaccharide biosynthesis protein (417 aa)    
Predicted Functional Partners:
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
          0.669
R2601_17499
Uncharacterized protein (464 aa)
   
          0.568
R2601_02313
Arginase (309 aa)
   
          0.538
R2601_04688
Succinoglycan biosynthesis protein (391 aa)
 
          0.530
R2601_04698
Exopolysaccharide polymerization/transport protein (763 aa)
              0.517
R2601_09492
Putative binding protein dependent transport lipoprotein (450 aa)
   
          0.516
R2601_17474
Putative periplasmic binding abc transporter protein (334 aa)
   
          0.492
R2601_04678
Glycosyltransferase, succinoglycan biosynthesis protein exom (297 aa)
 
          0.486
R2601_17469
Putative transcription regulator protein (283 aa)
   
          0.486
R2601_14540
Flagella basal body P-ring formation protein FlgA ; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly (138 aa)
   
          0.423
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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