STRINGSTRING
R2601_04723 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_04723" - WcaJ protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_04723WcaJ protein (220 aa)    
Predicted Functional Partners:
R2601_04698
Exopolysaccharide polymerization/transport protein (763 aa)
 
   
  0.918
R2601_15215
Exopolysaccharide biosynthesis domain protein (380 aa)
 
   
  0.861
R2601_04743
Mannose-6-phosphate isomerase, type II (477 aa)
   
   
  0.764
R2601_14320
Glycosyl transferase, WecB/TagA/CpsF family protein (254 aa)
     
  0.730
R2601_14335
Glycosyl transferase, group 1 family protein (411 aa)
   
  0.725
R2601_13689
Nucleotide sugar epimerase/dehydratase (628 aa)
 
   
  0.723
R2601_26106
Glycosyl transferase, group 1 (376 aa)
 
   
  0.701
R2601_15175
Glycosyl transferase, group 1 family protein (400 aa)
 
   
  0.684
R2601_15085
Glucosyltransferase (328 aa)
   
  0.649
R2601_14345
Oxidoreductase, Gfo/Idh/MocA family protein (699 aa)
   
   
  0.645
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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