STRINGSTRING
R2601_04878 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_04878" - Replication initiator RepC in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_04878Replication initiator RepC (354 aa)    
Predicted Functional Partners:
R2601_04888
ATPase, ParA type (391 aa)
 
     
  0.895
R2601_04883
ParB-like partition protein (326 aa)
 
     
  0.882
R2601_06913
RepA partitioning protein/ATPase, ParA type (402 aa)
 
     
  0.814
R2601_00325
ATPase, ParA type (391 aa)
 
     
  0.814
R2601_00320
ParB-like partition protein (315 aa)
 
     
  0.790
R2601_06593
Probable replication protein B (309 aa)
 
     
  0.786
R2601_06588
RepA partitioning protein/ATPase, ParA type (381 aa)
   
          0.762
R2601_06908
Rep B partitioning protein/ParB-like protein (318 aa)
 
          0.742
R2601_10474
Uncharacterized protein (178 aa)
   
          0.512
R2601_14295
Putative glycosyltransferase (421 aa)
   
          0.466
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]